Name

• sximgstat - run selected statistics on images

Usage

Usage in command lines:

• sximgstat.py stack1.hdf <stack2.hdf> <mask.hdf> --ccc --fsc file --inf --rad=r

Usage in python programming:

• imgstat( stacks, ifccc, fscfile, pinf, rad )

Input

stack1.hdf

image stack file

stack2.hdf

second image stack for ccc and fsc

mask.hdf

optional mask

Options

ccc

whether calculate the cross correlation coefficient.

fsc

calculate the resolution curve.

inf

print basic information of image, including size, average, standard error, minimal and maximal value.

rad

radius of a spherical/circular mask used for those operations. (Warning: mask file and radious cannot be given simultaneously).

Reference

None

Author / Maintainer

Wei Zhang

See also ccc, fsc

Keywords

category 1

APPLICATIONS

Files

applications.py

Maturity

stable

works for most people, has been tested; test cases/examples available.

Bugs

None. It is perfect.