Name

reconstitute_mask - Fill in the mask applied image with image average under the mask area such that image display would have non-sharp contrast. Perform it on k_means class averages before run e2display for display.

Usage

• reconstitued_image = reconstitute_mask(image_to_be_reconstituted, new_mask,save_file_on_disk, saved_file_name )

Input

image_to_be_reconstituted

in-core image, in-core image stack, or file name string, which are applied a mask. The value outside the image is zero.

new_mask

mask image, incore file or name string, or the raidus of mask under which the new_image is reconstituted

save_file_on_disk

output file is saved on disk or returned, default value is True.

save_file_name

The saved file name. By default, it is set as image_in_reconstituted_mask.hdf.

Output

reconstitued_image

image or image stack with masked area filled with image average.

Options

Description

Method

Reference

Author / Maintainer

Zhong Huang

Keywords

category 1

UTILITIES

Files

fundamentals.py

See also

Maturity

stable

works for most people, has been tested; test cases/examples available.

Bugs

None. It is perfect.